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大小: 2.99MB文件類型: .rar金幣: 2下載: 0 次發布日期: 2024-01-05
- 語言: Matlab
- 標簽: Biclustering??雙聚類??
資源簡介
雙聚類算法 , 解決了傳統聚類在對高維數據時遇到的瓶頸問題;文件包含了最常用的CC,FLOC,BiMax,OPSM,Plaid,SAMBA,xMOTIFs,LAS,Spectral CoClustering (Biclustering) 等多種雙聚類代碼,并注有代碼對應的文獻。

代碼片段和文件信息
function?v?=?additiveVariance(x?resultSet?number?dimension)
%?Preliminary?measure?of?additive?coherence?of?a?bicluster
%
%?S.?C.?Madeira?A.?L.?Oliveira
%?Biclustering?algorithms?for?biological?data?analysis:?a?survey.
%?IEEE/ACM?Trans?Comput?Biol?Bioinform.?2004?Jan-Mar?;1(1):24-45.
%
%?Inputs?
%???x?????????-?The?data?matrix?from?which?biclusters?were?identified
%???resultSet?-?The?bicluster?result?calculated?from?the?data?matrix
%???number????-?The?number(index)?of?bicluster?within?the?result.
%???dimension?-?‘both‘:?overall?variance
%???????????????‘row‘?:?row?variance
%???????????????‘col‘?:?column?variance
%
%?Output
%???v???-?Corresponding?variance?of?genes/conditions?as?the?average?of?the
%???sum?of?euclidean?distances?between?all?rows?and/or?columns?of?the
%???bicluster.
%
%?See?Also:?dif
%?Author:?Jayesh?Kumar?Gupta?2013.
%
%?Contact:?Jayesh?Kumar?Gupta?http://home.iitk.ac.in/~jayeshkg
%??????????Indian?Institute?of?Technology?Kanpur?India
if?nargin<4
??dimension?=?‘both‘;
end
rows?=?resultSet.Clust(number).rows;
cols?=?resultSet.Clust(number).cols;
A?=?x(rowscols);
if?strcmp(dimension?both)
??rv?=?variance(dif(A2));
??cv?=?variance(dif(A)2);
??[n?m]?=?size(A);
??
??v?=?(n.*rv+m.*cv)./(n+m);
else
??if?strcmp(dimension?‘row‘)?v?=?variance(dif(A2)2);??%?Same?as?Matlab?way
??elseif?strcmp(dimension?‘col‘)?v?=?variance(dif(A)1);
??end
end
end
?屬性????????????大小?????日期????時間???名稱
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?????文件?????????43??2013-10-01?19:14??雙聚類matlab工具箱,win和nix\mtba_nix\.git\COMMIT_EDITMSG
?????文件????????311??2013-05-23?09:56??雙聚類matlab工具箱,win和nix\mtba_nix\.git\config
?????文件?????????73??2013-05-11?16:21??雙聚類matlab工具箱,win和nix\mtba_nix\.git\desc
?????文件????????134??2013-07-11?14:32??雙聚類matlab工具箱,win和nix\mtba_nix\.git\FETCH_HEAD
?????文件?????????23??2013-05-13?18:06??雙聚類matlab工具箱,win和nix\mtba_nix\.git\HEAD
?????文件????????452??2013-05-11?16:21??雙聚類matlab工具箱,win和nix\mtba_nix\.git\hooks\applypatch-msg.sample
?????文件????????896??2013-05-11?16:21??雙聚類matlab工具箱,win和nix\mtba_nix\.git\hooks\commit-msg.sample
?????文件????????189??2013-05-11?16:21??雙聚類matlab工具箱,win和nix\mtba_nix\.git\hooks\post-update.sample
?????文件????????398??2013-05-11?16:21??雙聚類matlab工具箱,win和nix\mtba_nix\.git\hooks\pre-applypatch.sample
?????文件???????1704??2013-05-11?16:21??雙聚類matlab工具箱,win和nix\mtba_nix\.git\hooks\pre-commit.sample
?????文件???????1348??2013-05-11?16:21??雙聚類matlab工具箱,win和nix\mtba_nix\.git\hooks\pre-push.sample
?????文件???????4951??2013-05-11?16:21??雙聚類matlab工具箱,win和nix\mtba_nix\.git\hooks\pre-reba
?????文件???????1239??2013-05-11?16:21??雙聚類matlab工具箱,win和nix\mtba_nix\.git\hooks\prepare-commit-msg.sample
?????文件???????3611??2013-05-11?16:21??雙聚類matlab工具箱,win和nix\mtba_nix\.git\hooks\update.sample
?????文件???????6576??2013-10-01?19:13??雙聚類matlab工具箱,win和nix\mtba_nix\.git\index
?????文件????????240??2013-05-11?16:21??雙聚類matlab工具箱,win和nix\mtba_nix\.git\info\exclude
?????文件??????34791??2013-10-01?19:14??雙聚類matlab工具箱,win和nix\mtba_nix\.git\logs\HEAD
?????文件??????33998??2013-10-01?19:14??雙聚類matlab工具箱,win和nix\mtba_nix\.git\logs\refs\heads\master
?????文件??????10280??2013-10-01?19:14??雙聚類matlab工具箱,win和nix\mtba_nix\.git\logs\refs\remotes\origin\master
?????文件????????543??2013-05-25?16:37??雙聚類matlab工具箱,win和nix\mtba_nix\.git\ob
?????文件????????205??2013-05-31?12:13??雙聚類matlab工具箱,win和nix\mtba_nix\.git\ob
?????文件????????875??2013-05-30?18:15??雙聚類matlab工具箱,win和nix\mtba_nix\.git\ob
?????文件???????3223??2013-05-25?17:09??雙聚類matlab工具箱,win和nix\mtba_nix\.git\ob
?????文件???????1572??2013-06-18?15:57??雙聚類matlab工具箱,win和nix\mtba_nix\.git\ob
?????文件???????1452??2013-06-04?12:50??雙聚類matlab工具箱,win和nix\mtba_nix\.git\ob
?????文件????????202??2013-05-16?17:46??雙聚類matlab工具箱,win和nix\mtba_nix\.git\ob
?????文件????????710??2013-05-27?13:32??雙聚類matlab工具箱,win和nix\mtba_nix\.git\ob
?????文件???????1937??2013-07-11?09:56??雙聚類matlab工具箱,win和nix\mtba_nix\.git\ob
?????文件???????1392??2013-06-18?18:02??雙聚類matlab工具箱,win和nix\mtba_nix\.git\ob
?????文件????????557??2013-06-17?16:25??雙聚類matlab工具箱,win和nix\mtba_nix\.git\ob
............此處省略2464個文件信息
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