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  • 大小: 32KB
    文件類型: .zip
    金幣: 2
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    發布日期: 2021-05-28
  • 語言: Python
  • 標簽:

資源簡介

從Python高效處理FASTQ文件

資源截圖

代碼片段和文件信息

import?sys
from?distutils.core?import?setup?Extension
import?os
import?warnings

PYPINAME?=?“fastq-and-furious“
PACKAGENAME?=?“fastqandfurious“
VERSION=“0.2.0“

extra_compile_args?=?[‘-Wall‘]

CLASSIFIERS?=?[
????“Intended?Audience?::?Science/Research“
????“License?::?OSI?Approved?::?MIT?License“
????“Operating?System?::?POSIX?::?Linux“
????“Programming?Language?::?C++“
????“Programming?Language?::?Python?::?3?::?Only“
????“Programming?Language?::?Python?::?3.5“
????“Programming?Language?::?Python?::?3.6“
????“Topic?::?Scientific/Engineering“
]

if?tuple(sys.version_info[:2])?????print(“Error:?Python?>=?3.5?is?*required*.“)
????sys.exit(1)
????

if?sys.platform?==?‘darwin‘:
????warnings.warn(“Not?tested?on?OSX.?Feedback?welcome.“)
????pass
elif?sys.platform?==?‘linux‘:
????pass
else:
????raise?ValueError(“The?platform?%s?is?not?supported.“?%?sys.platform)

faf_mod?=?Extension(“%s._fastqandfurious“?%?PACKAGENAME
????????????????????sources=[“src/_fastqandfurious.c“?]
????????????????????#depends=[“src/.h“]
????????????????????#include_dirs=[“src“]
????????????????????language=“c“
????????????????????extra_compile_args?=?extra_compile_args?+?\
????????????????????[‘-O3‘?‘-std=c99‘])

setup(
????name?=?PYPINAME
????version?=?VERSION
????description?=?“Fast?handling?of?FASTQ?files“
????license?=?“MIT“
????author?=?“Laurent?Gautier“
????author_email?=?“lgautier@gmail.com“
????url?=?“https://github.com/lgautier/fastq-and-furious“
????packages?=?[PACKAGENAME
????????????????#PACKAGENAME?+?‘.tests‘
????????????????PACKAGENAME?+?‘.demo‘]
????package_dir?=?{PACKAGENAME:?‘src‘}
????ext_modules?=?[faf_mod?]
????extras_require?=?{
????????‘test‘?:?[‘pytest‘?]
????????‘demo‘?:?[‘ngs_plumbing‘?‘screed‘?‘biopython‘]}
????classifiers?=?CLASSIFIERS)




?屬性????????????大小?????日期????時間???名稱
-----------?---------??----------?-----??----
?????目錄???????????0??2019-02-03?19:55??fastq-and-furious-master\
?????文件?????????952??2019-02-03?19:55??fastq-and-furious-master\.travis.yml
?????文件????????1059??2019-02-03?19:55??fastq-and-furious-master\LICENSE
?????文件??????????25??2019-02-03?19:55??fastq-and-furious-master\MANIFEST.in
?????文件????????8127??2019-02-03?19:55??fastq-and-furious-master\README.md
?????目錄???????????0??2019-02-03?19:55??fastq-and-furious-master\data\
?????文件????????1505??2019-02-03?19:55??fastq-and-furious-master\data\test.fq
?????文件????????1617??2019-02-03?19:55??fastq-and-furious-master\data\test_longqualityheader.fq
?????文件?????????458??2019-02-03?19:55??fastq-and-furious-master\data\test_tricky.fq
?????文件????????1810??2019-02-03?19:55??fastq-and-furious-master\setup.py
?????目錄???????????0??2019-02-03?19:55??fastq-and-furious-master\src\
?????文件????????7140??2019-02-03?19:55??fastq-and-furious-master\src\_fastqandfurious.c
?????目錄???????????0??2019-02-03?19:55??fastq-and-furious-master\src\demo\
?????文件???????12777??2019-02-03?19:55??fastq-and-furious-master\src\demo\benchmark.py
?????文件????????9164??2019-02-03?19:55??fastq-and-furious-master\src\fastqandfurious.py
?????文件????????2939??2019-02-03?19:55??fastq-and-furious-master\tests.py
?????文件???????17202??2019-02-03?19:55??fastq-and-furious-master\throughput.png

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