function?[fdsubjects]?=?calcFD（subjectssubjectpathoptions）
%?Calculate?the?fractal?dimensionality?of?a?3D?structure.
%?Designed?to?work?with?intermediate?files?from?FreeSurfer?analysis?pipeline
%???（ribbon.mgz?aparc.a2009s+aseg.mgz?and?others）.
%?Also?can?use?other?mgz?volume?as?input?（e.g.?see?‘benchmark?folder‘）.
%
%?See?‘wrapper_sample.m‘?for?an?example?of?how?to?use?the?calcFD?toolbox.
%
%?REQUIRED?INPUTS:
%?subjects??????=?list?of?subjects?names?in?a?cell?array
%?????????????????alternatively?accepts?{‘.‘}?to?run?on?all?subjects?in?folder
%
%?subjectpath???=?FreeSurfer?‘SUBJECTDIR‘?where?standard?directory?structure?is
%
%?options???????=?specify?details?of?running?the?analysis
%
%?options.alg???=?‘dilate‘?|?‘boxcount‘
%
%?options.countFilled?=?0?|?1
%???????????????????????0???==?Surface-only?（FDs）
%???????????????????????1???==?Filled?volume?（FDf）
%
%?options.aparc?=?‘Ribbon‘?|?‘Dest_aparc‘?|?‘Dest_select‘?|?‘DKT‘?|?‘Economo‘?|?‘none‘
%?????????????????‘Ribbon‘??????==?Cortical?Ribbon?（unparcellated）
%?????????????????‘Dest_aparc‘??==?Parcellated?cortical?regions?（Destrieux）
%???????????????????????????????????**?requires?options.input.
%?????????????????‘Dest_select‘?==?Any?region?in?the?aparc.a2009s+aseg.mgz?volume
%???????????????????????????????????**?requires?options.input.
%?????????????????‘DKT‘?????????==?Parcellated?cortical?regions?（DKT）.
%???????????????????????????????????**?requires?aparc.DKTaltas+aseg.mgz?（FS?6）?or?
%??????????????????????????????????????aparc.DKTaltas40+aseg.mgz?（FS?5.3）?to?exist.
%???????????????????????????????????The?volume?can?be?generated?（FS?5.3）?using:
%???????????????????????????????????mri_aparc2aseg?--s?[SUBJECTID]?--annot?aparc.DKTatlas40
%???????????????????????????????????See?Madan?&?Kensinger?（2017?Brain?Informatics）?for?further?details.
%?????????????????‘Economo‘?????==?Parcellated?cortical?regions?（von?Economo-Koskinas）.
%???????????????????????????????????**?requires?economo+aseg.mgz?to?exist.
%???????????????????????????????????The?volume?can?be?generated?using:
%???????????????????????????????????mris_ca_label?mris_anatomical_stats?
%???????????????????????????????????See?Scholtens?et?al.?（2018?NeuroImage）?and?
%???????????????????????????????????Madan?&?Kensinger?（2018?Eur?J?Neurosci）?for?further?details.
%?????????????????‘none‘????????==?Binarized?volume?to?be?manually?entered?
%???????????????????????????????????（e.g.?benchmark?volumes）.
%
%?options.input?=?filename?string?required?for?‘Dest_aparc‘?and?‘Dest_select
%???????????????if?options.aparc?==?‘Dest_aparc‘
%???????????????????This?should?be?a?file?with?the?name?‘mask_*.txt‘
%???????????????????????where?*?is?the?value?in?options.input.
%???????????????????File?should?have?either?74?or?148?rows?only?1?column.
%???????????????????????If?only?74?values?labels?are?assigned?bilaterally.
%???????????????????Value?in?each?row?is?the?label?to?assign?to?that?parcellated?region
%???????????????????????based?on?the?Destri

?屬性????????????大小?????日期????時(shí)間???名稱
-----------?---------??----------?-----??----
?????目錄???????????0??2018-06-02?20:16??cMadan-calcFD-7160b02\
?????文件????????1113??2018-06-02?20:16??cMadan-calcFD-7160b02\CITATION
?????文件???????35141??2018-06-02?20:16??cMadan-calcFD-7160b02\LICENSE
?????文件????????1374??2018-06-02?20:16??cMadan-calcFD-7160b02\PUBLICATIONS.md
?????文件????????6090??2018-06-02?20:16??cMadan-calcFD-7160b02\README.md
?????文件??????????25??2018-06-02?20:16??cMadan-calcFD-7160b02\_config.yml
?????目錄???????????0??2018-06-02?20:16??cMadan-calcFD-7160b02\benchmark\
?????文件??????137359??2018-06-02?20:16??cMadan-calcFD-7160b02\benchmark\example_Sarmadillo.mgz
?????文件??????190870??2018-06-02?20:16??cMadan-calcFD-7160b02\benchmark\example_Sbunny.mgz
?????文件??????226490??2018-06-02?20:16??cMadan-calcFD-7160b02\benchmark\example_cube.mgz
?????文件???????93622??2018-06-02?20:16??cMadan-calcFD-7160b02\benchmark\example_fibercup.mgz
?????文件???????76780??2018-06-02?20:16??cMadan-calcFD-7160b02\benchmark\example_fibercup_disc.mgz
?????文件??????279022??2018-06-02?20:16??cMadan-calcFD-7160b02\benchmark\example_menger01.mgz
?????文件??????317358??2018-06-02?20:16??cMadan-calcFD-7160b02\benchmark\example_menger02.mgz
?????文件??????389660??2018-06-02?20:16??cMadan-calcFD-7160b02\benchmark\example_menger04.mgz
?????文件??????139838??2018-06-02?20:16??cMadan-calcFD-7160b02\benchmark\example_mug.mgz
?????文件??????209647??2018-06-02?20:16??cMadan-calcFD-7160b02\benchmark\example_sphere.mgz
?????文件??????138054??2018-06-02?20:16??cMadan-calcFD-7160b02\benchmark\example_teapot.mgz
?????目錄???????????0??2018-06-02?20:16??cMadan-calcFD-7160b02\calcFD\
?????文件???????12298??2018-06-02?20:16??cMadan-calcFD-7160b02\calcFD\calcFD.m
?????文件????????1057??2018-06-02?20:16??cMadan-calcFD-7160b02\calcFD\calcFD_boxcount.m
?????文件?????????510??2018-06-02?20:16??cMadan-calcFD-7160b02\calcFD\calcFD_dilate.m
?????文件?????????695??2018-06-02?20:16??cMadan-calcFD-7160b02\calcFD\calcFD_hollowVol.m
?????文件?????????990??2018-06-02?20:16??cMadan-calcFD-7160b02\calcFD\calcFD_save.m
?????文件?????????768??2018-06-02?20:16??cMadan-calcFD-7160b02\calcFD\calcFD_volCrop.m
?????文件????????7498??2018-06-02?20:16??cMadan-calcFD-7160b02\calcFD\load_mgh.m
?????目錄???????????0??2018-06-02?20:16??cMadan-calcFD-7160b02\examples\
?????文件???????14086??2018-06-02?20:16??cMadan-calcFD-7160b02\examples\calcFD_mask.xlsx
?????文件??????190347??2018-06-02?20:16??cMadan-calcFD-7160b02\examples\example_Sbunny.nii.gz
?????文件?????????707??2018-06-02?20:16??cMadan-calcFD-7160b02\examples\example_nii.m
?????文件??????????37??2018-06-02?20:16??cMadan-calcFD-7160b02\examples\lobes_legend.txt
............此處省略7個(gè)文件信息