#!/usr/bin/env?python
#?coding:?utf-8

#?In[6]:
“““
CUDA_VISIBLE_DEVICES=2?python?-W?ignore?BRATS2013_application.py?\
--run?1?\
--arch?Unet?\
--backbone?vgg16?\
--init?random?\
--verbose?1?\
--data?/mnt/dataset/shared/zongwei/BRATS2013/npy
“““

#?Keras==2.2.2
#?tensorflow-gpu==1.4.1
from?__future__?import?print_function
import?warnings
warnings.filterwarnings（‘ignore‘）
import?os
import?keras
print（“Keras?=?{}“.format（keras.__version__））
import?tensorflow?as?tf
os.environ[‘TF_CPP_MIN_LOG_LEVEL‘]?=?‘3‘??#?or?any?{‘0‘?‘1‘?‘2‘}
from?tqdm?import?tqdm
import?matplotlib.pyplot?as?plt
import?numpy?as?np
import?pylab
import?sys
import?math
import?SimpleITK?as?sitk
from?matplotlib?import?offsetbox
import?matplotlib.pyplot?as?plt
import?shutil
from?sklearn?import?metrics
import?random
from?random?import?shuffle
from?keras.callbacks?import?LambdaCallback?TensorBoard
from?glob?import?glob
from?skimage.transform?import?resize
from?optparse?import?OptionParser
from?segmentation_models?import?Nestnet?Unet?Xnet
from?helper_functions?import?*
from?keras.utils?import?plot_model

sys.setrecursionlimit（40000）

parser?=?OptionParser（）

parser.add_option（“--run“?dest=“run“?help=“the?index?of?gpu?are?used“?default=1?type=“int“）
parser.add_option（“--arch“?dest=“arch“?help=“Unet“?default=None?type=“string“）
parser.add_option（“--init“?dest=“init“?help=“random?|?finetune“?default=None?type=“string“）
parser.add_option（“--backbone“?dest=“backbone“?help=“the?backbones“?default=None?type=“string“）
parser.add_option（“--decoder“?dest=“decoder_block_type“?help=“transpose?|?upsampling“?default=“transpose“?type=“string“）
parser.add_option（“--input_rows“?dest=“input_rows“?help=“input?rows“?default=256?type=“int“）
parser.add_option（“--input_cols“?dest=“input_cols“?help=“input?cols“?default=256?type=“int“）
parser.add_option（“--input_deps“?dest=“input_deps“?help=“input?deps“?default=3?type=“int“）
parser.add_option（“--nb_class“?dest=“nb_class“?help=“number?of?class“?default=1?type=“int“）
parser.add_option（“--verbose“?dest=“verbose“?help=“verbose“?default=0?type=“int“）
parser.add_option（“--weights“?dest=“weights“?help=“pre-trained?weights“?default=None?type=“string“）
parser.add_option（“--data“?dest=“DATA_DIR“?help=“data?set?location“?default=“Data/BRATS“?type=“string“）
parser.add_option（“--batch_size“?dest=“batch_size“?help=“batch?size“?default=2048?type=“int“）

（options?args）?=?parser.parse_args（）

assert?options.backbone?in?[‘vgg16‘
????????????????????????????‘vgg19‘
????????????????????????????‘resnet18‘
????????????????????????????‘resnet34‘
????????????????????????????‘resnet50‘
????????????????????????????‘resnet101‘
????????????????????????????‘resnet152‘
????????????????????????????‘resnext50‘
????????????????????????????‘resnext101‘
????????????????????????????‘densenet121‘
????????????????????????????‘densenet169‘
????????????????????????????‘densenet201‘
????????????????????????????‘inceptionv3‘
??????????

?屬性????????????大小?????日期????時間???名稱
-----------?---------??----------?-----??----
?????目錄???????????0??2019-05-25?20:53??UNetPlusPlus-master\
?????文件????????1157??2019-05-25?20:53??UNetPlusPlus-master\.gitignore
?????文件???????12177??2019-05-25?20:53??UNetPlusPlus-master\BRATS2013_application.py
?????目錄???????????0??2019-05-25?20:53??UNetPlusPlus-master\Figures\
?????文件??????298346??2019-05-25?20:53??UNetPlusPlus-master\Figures\fig_UNet++.png
?????文件??????419252??2019-05-25?20:53??UNetPlusPlus-master\Figures\fig_inference_time.png
?????文件??????649067??2019-05-25?20:53??UNetPlusPlus-master\Figures\fig_prediction_comparison.png
?????文件??????507696??2019-05-25?20:53??UNetPlusPlus-master\Figures\fig_unet++.png
?????文件????????1069??2019-05-25?20:53??UNetPlusPlus-master\LICENSE
?????文件????????7822??2019-05-25?20:53??UNetPlusPlus-master\README.md
?????文件???????14085??2019-05-25?20:53??UNetPlusPlus-master\helper_functions.py
?????文件??????????98??2019-05-25?20:53??UNetPlusPlus-master\requirements.txt
?????目錄???????????0??2019-05-25?20:53??UNetPlusPlus-master\segmentation_models\
?????文件?????????182??2019-05-25?20:53??UNetPlusPlus-master\segmentation_models\__init__.py
?????目錄???????????0??2019-05-25?20:53??UNetPlusPlus-master\segmentation_models\__pycache__\
?????文件?????????379??2019-05-25?20:53??UNetPlusPlus-master\segmentation_models\__pycache__\__init__.cpython-35.pyc
?????文件?????????324??2019-05-25?20:53??UNetPlusPlus-master\segmentation_models\__pycache__\__init__.cpython-36.pyc
?????文件????????3150??2019-05-25?20:53??UNetPlusPlus-master\segmentation_models\__pycache__\utils.cpython-35.pyc
?????文件????????2953??2019-05-25?20:53??UNetPlusPlus-master\segmentation_models\__pycache__\utils.cpython-36.pyc
?????文件??????????62??2019-05-25?20:53??UNetPlusPlus-master\segmentation_models\__version__.py
?????目錄???????????0??2019-05-25?20:53??UNetPlusPlus-master\segmentation_models\backbones\
?????文件?????????229??2019-05-25?20:53??UNetPlusPlus-master\segmentation_models\backbones\__init__.py
?????目錄???????????0??2019-05-25?20:53??UNetPlusPlus-master\segmentation_models\backbones\__pycache__\
?????文件?????????456??2019-05-25?20:53??UNetPlusPlus-master\segmentation_models\backbones\__pycache__\__init__.cpython-35.pyc
?????文件?????????427??2019-05-25?20:53??UNetPlusPlus-master\segmentation_models\backbones\__pycache__\__init__.cpython-36.pyc
?????文件????????1114??2019-05-25?20:53??UNetPlusPlus-master\segmentation_models\backbones\__pycache__\backbones.cpython-35.pyc
?????文件????????1000??2019-05-25?20:53??UNetPlusPlus-master\segmentation_models\backbones\__pycache__\backbones.cpython-36.pyc
?????文件???????12496??2019-05-25?20:53??UNetPlusPlus-master\segmentation_models\backbones\__pycache__\inception_resnet_v2.cpython-35.pyc
?????文件???????11629??2019-05-25?20:53??UNetPlusPlus-master\segmentation_models\backbones\__pycache__\inception_resnet_v2.cpython-36.pyc
?????文件???????11079??2019-05-25?20:53??UNetPlusPlus-master\segmentation_models\backbones\__pycache__\inception_v3.cpython-35.pyc
?????文件????????9902??2019-05-25?20:53??UNetPlusPlus-master\segmentation_models\backbones\__pycache__\inception_v3.cpython-36.pyc
............此處省略166個文件信息